rs32828379 SNP Detail

Summary

• ID
  rs32828379
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr2:109748195 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              AGGGAAAAGG ACGCGCGGAG
  CGGGAGCCGC CTCGGGGAGA GCGCGGACAA CCAGGGTGTT TGTGAGAGCT GGGGCGGGGG
  TTGGGACGCC TGGCCGGCAT GGCTGGAGGC TGCGCTCCGC AACCTTGAGG AGCTGTGCGG
  CTGGAGGAGG CCCGGGACAG GAGGCGGCGG CGATGGCAGC GCGCGGCCCG GGCAGCCGCT
  Y
  TGGGCCGGGT CGGCTGGCCT GAGCCGCGGG GCTGCCGGTG CGCGTCCATG GAGCAGCGGG
  AAGGGAGAAA CTGCGGAGCG CCGCGTCCTA ACGCTCCGGC GGCAGACTGC TGAAGGAAGC
  GAGCGCACGC GGACCGCCGA GGGACGGCGC CCGGGCCCCG AGCCCCGCAG GCCGGCTGCC
  CCTGGTGCGG CGCGGTGCGG                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J
ss45199857	mCV23138108	ABI	CRAMUS_MOUSE	f	SNP	T	C
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J
rs32828379					SNP	T	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:109748195 () rs orientation: forward

Symbol	Name	Function Class
Cpgi12039	CpG island 12039	within coordinates
Lgr4	leucine-rich repeat-containing G protein-coupled receptor 4	mRNA-UTR
Rr397176	regulatory region 397176	191 bp downstream
Rr562509	regulatory region 562509	193 bp distal
Rr562510	regulatory region 562510	within coordinates
Rr562511	regulatory region 562511	66 bp distal
Rr562512	regulatory region 562512	27 bp distal
Rr562513	regulatory region 562513	340 bp proximal
Tssr19307	transcription start site region 19307	258 bp downstream
Tssr19308	transcription start site region 19308	212 bp downstream
Tssr19309	transcription start site region 19309	194 bp downstream
Tssr19310	transcription start site region 19310	164 bp downstream
Tssr19311	transcription start site region 19311	114 bp downstream