rs32828948 SNP Detail

Summary

• ID
  rs32828948
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr1:36501211 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TATCTAAAGC CACTGACTGA
  ACACTTCCTC CTCCCCTGCC CTAGTCTCTG GCACTGGCAC TGCTGCCTCT TTAGAGGAGG
  TCCAACCCAC TCTACAGACG CCTAAGCTGT CATAAGGACA GTGCTGGGAC CAGTTGGCAT
  GGTGACCAGC TGTGCTGAAA GTGGTGATCT CTAGCGGCTT CTGAACACCA GGAGTGGTTC
  Y
  GTGAGTGGTT TGACCCCCTT GTCCTCATCA TCTGGCTTGT GCCCCACCTC AGCACCCCAA
  CAGCTGTCAC CCTGGCCTTT CCCTGTCTCT GTCTTGTGTC CCGTGTGTAT CTCTACCTAC
  TAGACCTGGA CATGTTGCTA AACAGTGTTT TGTGCTTCTT TTTTATTTTG TTTTGTTTTG
  CTTCATCTTA GAGGCTCTCT                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss47219249	NES11100970	PERLEGEN	MM_PANEL2	f	SNP	T	T	T	T	T	T	T	T	T	T	C	T	T	C	T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs32828948					SNP	T	T	T	T	T	T	T	T	T	T	C	T	T	C	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss47219249	NES11100970	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr1:36501211 () rs orientation: forward

Symbol	Name	Function Class
Gm33401	predicted gene, 33401	within coordinates
Rr409306	regulatory region 409306	1736 bp proximal
Tssr6266	transcription start site region 6266	123 bp downstream