rs32829877 SNP Detail

Summary

• ID
  rs32829877
• Variation Type
  SNP
• Alleles
  A/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr2:145746057 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TCTTTTCAGT CCAAAATTTA
  AAAACCCGTG ATTTGCCGTT CTCCCCTTCT CGCTTTTTAA AAAGAAAAAA AAATTTAGTT
  TGGAATCCAA ATTATGACCA TTTAAAAAGC TCAGCATTTC ACCGCGAACT CCTGTAGACA
  CATGACCTCG GTTATTTGCT TGATATAACG TAGTAAGAAG TATGGACCGG AAGGTTTAGG
  W
  AACAGAAGGG AAGAAACTCT GGGATGATGG ACATTTCAAA GAGGGGATGA ACCTTGATGA
  AGGAAATTTG GCAAGGAGGA AACTCTGGAG AAGGCTGCAG GAAAATGGAG TGTGAAGCAG
  GGTAGGCCTT TGCTTCAGGT GAAGCCAGGT TTAATTATCG TGTTTAATTG GTTCAGATCC
  GATCTTGTGA GATTTCGGTT                                            
  
  W = A/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/J	C57BL/6J	LG/J	SM/J
ss45199478	mCV23170962	ABI	CRAMUS_MOUSE	f	SNP	A	T
ss147849408	ENSMUSSNP406042	ENSEMBL	ENSEMBL_Sanger	f	SNP	A
ss320538611	CHEV_2_145729873	CHEVERUD	SCREENING_POP	f	SNP			A	T
SNP Consensus Information
SNP					Consensus Type	A/J	C57BL/6J	LG/J	SM/J
rs32829877					SNP	A	T	A	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:145746057 () rs orientation: forward

Symbol	Name	Function Class
Cpgi12364	CpG island 12364	480 bp distal
Gm74898	predicted gene, 74898	932 bp upstream
Naa20	N(alpha)-acetyltransferase 20, NatB catalytic subunit	within coordinates
Rr39036	regulatory region 39036	1744 bp proximal
Rr55740	regulatory region 55740	within coordinates
Rr397366	regulatory region 397366	804 bp downstream
Tssr20600	transcription start site region 20600	910 bp downstream
Tssr20601	transcription start site region 20601	837 bp downstream
Tssr20602	transcription start site region 20602	234 bp downstream