rs32831500 SNP Detail

Summary

• ID
  rs32831500
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  142
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr4:85124108 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        TGCCA CTCTAGCACT CAGACCTCAG
  Y
  TCCCTTCCCC TGGCATCTCT GCTCT                                      
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	C57BL/6J	DBA/2J	LG/J	SM/J
ss45701010	mCV22286162	ABI	CRAMUS_MOUSE	f	SNP	T	C	T	C
ss146897498	ENSMUSSNP661554	ENSEMBL	ENSEMBL_Sanger	f	SNP		C		C
ss321193470	CHEV_4_84851775	CHEVERUD	SCREENING_POP	f	SNP					C	T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	C57BL/6J	DBA/2J	LG/J	SM/J
rs32831500					SNP	T	C	T	C	C	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:85124108 () rs orientation: forward

Symbol	Name	Function Class
Cpgi14412	CpG island 14412	within coordinates
Rr376767	regulatory region 376767	1890 bp upstream
Rr594659	regulatory region 594659	326 bp distal
Rr594660	regulatory region 594660	within coordinates
Rr594661	regulatory region 594661	189 bp distal
Rr594662	regulatory region 594662	1841 bp proximal
Sh3gl2	SH3-domain GRB2-like 2	Intron
Tssr37705	transcription start site region 37705	740 bp downstream
Tssr37706	transcription start site region 37706	722 bp downstream
Tssr37707	transcription start site region 37707	679 bp downstream
Tssr37708	transcription start site region 37708	643 bp downstream
Tssr37709	transcription start site region 37709	376 bp downstream
Tssr37710	transcription start site region 37710	355 bp downstream
Tssr37711	transcription start site region 37711	349 bp downstream
Tssr37712	transcription start site region 37712	186 bp downstream