rs32836338 SNP Detail

Summary

• ID
  rs32836338
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr1:36595204 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GGCACTCACC CCCAGAAGAT
  ACTGTCTTCC GGGGCACAAG GTTCCACCAC ATCTCAGCCC CGATGCCCAG GCCCCACAGC
  CCTGCTGCCA GCAGCCAGAC AGCCCAGTGT GGGGCCATGG CAGACACCCA GGGTCTAAAC
  TTCAGTCCAG CAGCCCTGCT GAAGGAAAAG AAACTGGTCA GCATCACAGA CCGGAAGGGG
  R
  CCCGCACCAA GAGACAAGCA ACACAGGACG CACACTGGAA CAAACCTCCC CCAGAGCCTT
  TACATCTCCT CCTGATCCTG CAACTGGCCT CTGCCCACAA GAGCCCTGGG GGTCTCCCAG
  AAGAGCAAGG AGAGGAACTT AGTCAGCAAG CACTAGGCGT GGGCAGTCAT CAAAAGCCGC
  CTGTGGCCTC CAGGCCATCC                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/J	AKR/J	DBA/2J	FVB/NJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss47220380	NES11095690	PERLEGEN	MM_PANEL2	f	SNP	G	G	G	G	G	G	A	G
SNP Consensus Information
SNP					Consensus Type	A/J	AKR/J	DBA/2J	FVB/NJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs32836338					SNP	G	G	G	G	G	G	A	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss47220380	NES11095690	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr1:36595204 () rs orientation: forward

Symbol	Name	Function Class
Cpgi148	CpG island 148	476 bp proximal
D430040D24Rik	RIKEN cDNA D430040D24 gene	1578 bp upstream
Rr409349	regulatory region 409349	409 bp distal
Rr409350	regulatory region 409350	1125 bp proximal
Rr409351	regulatory region 409351	1393 bp proximal
Sema4c	sema domain, immunoglobulin domain (Ig), transmembrane domain (TM) and short cytoplasmic domain, (semaphorin) 4C	within coordinates
Tssr40	transcription start site region 40	1572 bp upstream
Tssr11262	transcription start site region 11262	538 bp downstream
Tssr11263	transcription start site region 11263	1394 bp downstream