rs32837135 SNP Detail

Summary

• ID
  rs32837135
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  142
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr1:36597433 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        GGGGC TGCGACCCGC TGCCTTGCTT
  R
  CCCGGCACTG AGGCTTGGGG ACCCT                                      
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	AKR/J	DBA/2J	FVB/NJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss47220389	NES11095693	PERLEGEN	MM_PANEL2	f	SNP	A	A	A	A	A	G	A
SNP Consensus Information
SNP					Consensus Type	AKR/J	DBA/2J	FVB/NJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs32837135					SNP	A	A	A	A	A	G	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss47220389	NES11095693	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr1:36597433 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
D430040D24Rik	RIKEN cDNA D430040D24 gene			within coordinates
Rr409350	regulatory region 409350			1083 bp distal
Rr409351	regulatory region 409351			20 bp distal
Rr409352	regulatory region 409352			within coordinates
Rr409353	regulatory region 409353			18 bp proximal
Sema4c	sema domain, immunoglobulin domain (Ig), transmembrane domain (TM) and short cytoplasmic domain, (semaphorin) 4C			mRNA-UTR
				Splice-Site
Tssr40	transcription start site region 40			621 bp downstream
Tssr11262	transcription start site region 11262			1661 bp upstream
Tssr11263	transcription start site region 11263			791 bp upstream
Tssr11264	transcription start site region 11264			140 bp upstream
Tssr11265	transcription start site region 11265			86 bp upstream
Tssr11266	transcription start site region 11266			within coordinates