rs32837141 SNP Detail

Summary

• ID
  rs32837141
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr1:36598032 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GCAGAGGAGA CCCCAAGACT
  GCAGGCAGCT CCTAGTTTCC AGGCTCCAGC AGAGCCTACC CCCGGGAAAT GACTCTTGGT
  GTGGCTTGGA AGGCTGATTA ACTAGAGGCA CGAGCGCGCC ACGGTTCAGA TGAAAGAGGC
  TGGAGGGAGC CACGCAGCGA ACCACCACCA CCTTCAGAAC TGCCAGCCTC CGCCCACAGG
  Y
  GCTCCTAGAA GTAACTTGTA GCTGTGGCCT CCTGGACGGT GCTGGCTGGC AAATCCTTCC
  AGCCAGCTGG TCCTCCAGTG GGCAGGTGGA CTGAGAAACC TCGGGGAAAC TGCCCCAGCG
  GTACCTGGAG ACCACCCCTA ACCAGAATCA AAGGACAGGG ACGAAGGGAA GGAGGCCTGG
  AGGTTTCTGT GGTAACTTTG                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	DBA/2J	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ
ss47220395	NES11095695	PERLEGEN	MM_PANEL2	f	SNP	C	C	C	T
SNP Consensus Information
SNP					Consensus Type	DBA/2J	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ
rs32837141					SNP	C	C	C	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss47220395	NES11095695	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr1:36598032 () rs orientation: forward

Symbol	Name	Function Class
Cpgi148	CpG island 148	25 bp distal
D430040D24Rik	RIKEN cDNA D430040D24 gene	within coordinates
Rr409350	regulatory region 409350	1682 bp distal
Rr409351	regulatory region 409351	619 bp distal
Rr409352	regulatory region 409352	582 bp distal
Rr409353	regulatory region 409353	within coordinates
Rr409354	regulatory region 409354	1868 bp proximal
Sema4c	sema domain, immunoglobulin domain (Ig), transmembrane domain (TM) and short cytoplasmic domain, (semaphorin) 4C	602 bp upstream
Tssr40	transcription start site region 40	1220 bp downstream
Tssr11263	transcription start site region 11263	1390 bp upstream
Tssr11264	transcription start site region 11264	739 bp upstream
Tssr11265	transcription start site region 11265	685 bp upstream
Tssr11266	transcription start site region 11266	585 bp upstream