rs32837143 SNP Detail

Summary

• ID
  rs32837143
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr1:36598220 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TCCGCCCACA GGCGCTCCTA
  GAAGTAACTT GTAGCTGTGG CCTCCTGGAC GGTGCTGGCT GGCAAATCCT TCCAGCCAGC
  TGGTCCTCCA GTGGGCAGGT GGACTGAGAA ACCTCGGGGA AACTGCCCCA GCGGTACCTG
  GAGACCACCC CTAACCAGAA TCAAAGGACA GGGACGAAGG GAAGGAGGCC TGGAGGTTTC
  Y
  GTGGTAACTT TGAGCCCCAG GGGGCAGTCC CGGAGGGGAA AAAACACTTC AGACCCCATA
  AGTAAAATCT GGAGTATAAA TCAGTCCGAC AGCAGCTTTT GTTCTGGGCT AAAACGTGGC
  ACCTGAGAAG TGAAGAGCAG AAGAGCAATG GGAGTAATCG AGAATGGCAG CCCAGTTTGG
  TTTCAGTAAC AATTGGGTCT                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	AKR/J	DBA/2J	FVB/NJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ
ss47220398	NES11095696	PERLEGEN	MM_PANEL2	f	SNP	T	T	T	T	T	C
SNP Consensus Information
SNP					Consensus Type	AKR/J	DBA/2J	FVB/NJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ
rs32837143					SNP	T	T	T	T	T	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss47220398	NES11095696	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr1:36598220 () rs orientation: forward

Symbol	Name	Function Class
Cpgi148	CpG island 148	213 bp distal
D430040D24Rik	RIKEN cDNA D430040D24 gene	within coordinates
Rr409350	regulatory region 409350	1870 bp distal
Rr409351	regulatory region 409351	807 bp distal
Rr409352	regulatory region 409352	770 bp distal
Rr409353	regulatory region 409353	within coordinates
Rr409354	regulatory region 409354	1680 bp proximal
Sema4c	sema domain, immunoglobulin domain (Ig), transmembrane domain (TM) and short cytoplasmic domain, (semaphorin) 4C	790 bp upstream
Tssr40	transcription start site region 40	1408 bp downstream
Tssr11263	transcription start site region 11263	1578 bp upstream
Tssr11264	transcription start site region 11264	927 bp upstream
Tssr11265	transcription start site region 11265	873 bp upstream
Tssr11266	transcription start site region 11266	773 bp upstream