rs32837946 SNP Detail

Summary

• ID
  rs32837946
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr1:36598383 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              AAGGACAGGG ACGAAGGGAA
  GGAGGCCTGG AGGTTTCTGT GGTAACTTTG AGCCCCAGGG GGCAGTCCCG GAGGGGAAAA
  AACACTTCAG ACCCCATAAG TAAAATCTGG AGTATAAATC AGTCCGACAG CAGCTTTTGT
  TCTGGGCTAA AACGTGGCAC CTGAGAAGTG AAGAGCAGAA GAGCAATGGG AGTAATCGAG
  R
  ATGGCAGCCC AGTTTGGTTT CAGTAACAAT TGGGTCTTTA CTGGGACACA GAAGGGCCCC
  TTCTCCCTCG CTGGCCAGAG CCACGTTTCC CAGCTCCTTT CCATTAGGAA ACAAAGCTGT
  GACCTCAGAG ATAGGAGGCA GGCCAGCTAT TGCCAGGGGT GGGCAGGGAG GGTGTCCTAT
  GGAAGCTGGC CAGGGAGGGA                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	DBA/2J	FVB/NJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ
ss47220401	NES11095697	PERLEGEN	MM_PANEL2	f	SNP	A	A	A	A	A	A	A	G
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	DBA/2J	FVB/NJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ
rs32837946					SNP	A	A	A	A	A	A	A	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss47220401	NES11095697	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr1:36598383 () rs orientation: forward

Symbol	Name	Function Class
Cpgi148	CpG island 148	376 bp distal
D430040D24Rik	RIKEN cDNA D430040D24 gene	within coordinates
Rr409351	regulatory region 409351	970 bp distal
Rr409352	regulatory region 409352	933 bp distal
Rr409353	regulatory region 409353	within coordinates
Rr409354	regulatory region 409354	1517 bp proximal
Rr409355	regulatory region 409355	1969 bp proximal
Sema4c	sema domain, immunoglobulin domain (Ig), transmembrane domain (TM) and short cytoplasmic domain, (semaphorin) 4C	953 bp upstream
Tssr40	transcription start site region 40	1571 bp downstream
Tssr11263	transcription start site region 11263	1741 bp upstream
Tssr11264	transcription start site region 11264	1090 bp upstream
Tssr11265	transcription start site region 11265	1036 bp upstream
Tssr11266	transcription start site region 11266	936 bp upstream