rs32838223 SNP Detail

Summary

• ID
  rs32838223
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr8:4297316 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CAGTTTCGAG GACAGAGTGG
  GGTATGTTTC CTTTTTGTTG GTGATGCATG CAGTTCAAGT GGACAAGAGA ACAATATAAC
  AAAACAAAAA AATTTACAAC CACAAATCCC AGCACCAAAG TTGAGAAACC TTGCTGGAAG
  TAGCTGATGC AACCATACGT AGGCTTAGGT GACACTGTGG CTCTTAACTG TCCTGTTGAC
  R
  CCTCTTCATC CTATTCTCAC AATGCCGCAT GCTTAAATCG TAATAGAAGT CATCTTCTAT
  GCCCGGGTAG GGTAGGGCAC CCTCTCTCCT TATCTCCTGT GTTGGGGAGG CGGAATGAAG
  TAGGGAGAGA GTAGCAAGCC CGGCCCCACC CTTACCATTC TGAGGCTGGC CGCAGCATGG
  CTAGCCTTTG TGTGTACTTA                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss46197669	mCV23274618	ABI	CRAMUS_MOUSE	f	SNP	A	G					G		G
ss61075439	NES16047351	PERLEGEN	MM_PANEL2	f	SNP		G	G	G	G	G		A	G	G	G	G	G	G	A	G
ss148556208	ENSMUSSNP1819600	ENSEMBL	ENSEMBL_Sanger	f	SNP		G							G
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs32838223					SNP	A	G	G	G	G	G	G	A	G	G	G	G	G	G	A	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss61075439	NES16047351	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr8:4297316 () rs orientation: forward

Symbol	Name	Function Class
Cpgi20049	CpG island 20049	1951 bp proximal
Gm49320	predicted gene, 49320	within coordinates
Gm63796	predicted gene, 63796	within coordinates
Map2k7	mitogen-activated protein kinase kinase 7	within coordinates
Tgfbr3l	transforming growth factor, beta receptor III-like	898 bp upstream
Tssr76110	transcription start site region 76110	872 bp upstream
Tssr76111	transcription start site region 76111	907 bp upstream
Tssr76112	transcription start site region 76112	932 bp upstream