rs32838809 SNP Detail

Summary

• ID
  rs32838809
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr3:86674818 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              AGGGGAAGAT GGGGATAAAG
  GTGGAACGAC TAGAACAAAT CTCAAATAGT GTAGTTTTGC ATAATTAAAA GGTGGTAGAA
  CTTCCACTGA AAACTTCGGA AGTTAATGGA AAGGTTTAAG AAACATTTAT CAGAGGGAAA
  AGGAAACATT TATCAGCAAA AGCCATTTCC TTTCTTGATT TACCATTGTG GTAAGCCACA
  Y
  GAGAAAGCCT AGTATTTGGT TTGCACATGA GTGTTTTGTA TTAATCAGCA GCAATTAATA
  AACAAACTCT GTGTATAAAG TACAGGTATC TCTCTTCAGG AAGTAACCGC ATGTCCTCTA
  TAGGTTTCCT CTCTTTGGTG TTTAAATACT TAAGACTTAA AATCGCATTA TGCTTTCTGG
  TTTTTAAACG TACATGGATC                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss46735370	NES10754584	PERLEGEN	MM_PANEL2	f	SNP	T	T	T	T	T	T	C	T	T	T	T	T	T	T	C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs32838809					SNP	T	T	T	T	T	T	C	T	T	T	T	T	T	T	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss46735370	NES10754584	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:86674818 () rs orientation: forward

Symbol	Name	Function Class
Gm37876	predicted gene, 37876	560 bp downstream
Lrba	LPS-responsive beige-like anchor	Intron
Rr579374	regulatory region 579374	1101 bp proximal