rs32839727 SNP Detail

Summary

• ID
  rs32839727
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr3:86675072 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              ATTAATAAAC AAACTCTGTG
  TATAAAGTAC AGGTATCTCT CTTCAGGAAG TAACCGCATG TCCTCTATAG GTTTCCTCTC
  TTTGGTGTTT AAATACTTAA GACTTAAAAT CGCATTATGC TTTCTGGTTT TTAAACGTAC
  ATGGATCCAA AGTAGCTTCT GATGTTGTGT TGTTTTGTTT TGTTTTAACA GAATGAAGTT
  Y
  AATGTTCTAT TTTAGTTTTC TTTAGACAGA CAAGAGTTTA CTAGTGTGAA GTTGTATCAC
  TGGTGTTTAC TCAAAGAGTC ATTAATTAAC CCAAAGCACT TGTAATTAAG TGCTTGCGTC
  TCAGTTGTGT TTTAACCTTT AAAGTCAAGT GCTCAAGTAC AATTTGCAGG ATTATGATAA
  GATAGAACTT GATTTGGTAA                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss46735379	NES10754587	PERLEGEN	MM_PANEL2	f	SNP	C	C	C	C	C	C	C	C	C	C	T	C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs32839727					SNP	C	C	C	C	C	C	C	C	C	C	T	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss46735379	NES10754587	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:86675072 () rs orientation: forward

Symbol	Name	Function Class
Gm37876	predicted gene, 37876	306 bp downstream
Lrba	LPS-responsive beige-like anchor	Intron
Rr579374	regulatory region 579374	847 bp proximal