rs32840230 SNP Detail

Summary

• ID
  rs32840230
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr1:36632277 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                    GAGTGTTGT GTGGAGCTGA AAGAAGCAAA
  TGTGGGCCCT CTGGTCCCAC TGCAGACACT GCAGGAGCAC AGCCAGCAAG AGCACAGCAg
  ggagggggag gggaggaggg agagggaggg ggagggTCCA GGGAAAGCCC CTCTGCACCT
  R
  CCTTGTCTCT GCTTTGTTCC CCGTGCACAC CTGCTCATTG TGAAATCCCT TCCTCCCAGG
  CTGCTGTCTT CAGCTAACTC CTTGTGGAGG GATCAAGGAG ATTGAACTTC CTTGATTGGC
  CACTTCAAAA TAAAAGGATG CTGAGAGGGC                                 
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
ss47221142	NES11093424	PERLEGEN	MM_PANEL2	f	SNP	A	G	A	A	A	G	G	A	A	A		G	A	G	G		A
ss319689122	CHEV_1_36650041	CHEVERUD	SCREENING_POP	f	SNP											G					G
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
rs32840230					SNP	A	G	A	A	A	G	G	A	A	A	G	G	A	G	G	G	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss47221142	NES11093424	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr1:36632277 () rs orientation: forward

Symbol	Name	Function Class
Fam178b	family with sequence similarity 178, member B	within coordinates
Rr409368	regulatory region 409368	1386 bp distal
Rr409369	regulatory region 409369	within coordinates
Tssr11268	transcription start site region 11268	119 bp downstream