rs32840257 SNP Detail

Summary

• ID
  rs32840257
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr4:152180928 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              AGGTCCTCTG CTTTTTCCCA
  CTAACCCTCA TGCCACCTCC CGATTCTCTC CCAGGTCACG TGTTCCGTTG GATTCCCTAC
  TGGAGCAGAT TCCAGGGCTC CTGTGTGTGT GTGTGTGTGT GTGTGTGTGT GTGGTTGTTT
  GTAAGGCTTT GCATGGGGCT GACATGGACC CTCAACAGCA GGATGCTGGA GACCCAGCAA
  R
  GAGAGTTGTC CACGGGTGTC TGGCAAGCAG CGTCCTAGGA TCCCAAGGAA GTTGACCCGT
  AAACCAGCTG CACCCTCCTG TGTGGTGTCT GGAGCCCAGC CCCTGGGGTG GAGAAGCATG
  GGGTTAAGGC CCAAAAGCTG GGCTTCCAAG TCTGTACTCT GGTCTGAGTA GCCCAGGCTG
  GGAGTGGCTG GGGTTCCGCG                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss46736226	NES10988701	PERLEGEN	MM_PANEL2	f	SNP	G	G	G	G	G	G	G	G	G	G	A	G	G	A	G
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs32840257					SNP	G	G	G	G	G	G	G	G	G	G	A	G	G	A	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss46736226	NES10988701	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:152180928 () rs orientation: forward

Symbol	Name	Function Class
Cpgi15387	CpG island 15387	219 bp proximal
Plekhg5	pleckstrin homology domain containing, family G (with RhoGef domain) member 5	within coordinates
Rr377434	regulatory region 377434	343 bp upstream
Tssr40496	transcription start site region 40496	227 bp upstream
Tssr40497	transcription start site region 40497	265 bp upstream