rs32840263 SNP Detail

Summary

• ID
  rs32840263
• Variation Type
  SNP
• Alleles
  A/C

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr4:152181225 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CAGCCCCTGG GGTGGAGAAG
  CATGGGGTTA AGGCCCAAAA GCTGGGCTTC CAAGTCTGTA CTCTGGTCTG AGTAGCCCAG
  GCTGGGAGTG GCTGGGGTTC CGCGGGGTGT CACCAGCCCA GCCCCCTTCA CCCCTCCCAG
  GCGCAACTGC ACAATGGCAG GAAGCGGGGC TCAGTGCTTT GTCCCTAGCG CGGCGCAGAC
  M
  GTAGCTTCCT CCGGCCACCA TGGGGACAGG ACCGGGCGTC TCCGGGCGCC GAGCAGCAGC
  CAGGCCCAGC TCTGAGCTAC CCTCCCCAGA CTCCCAGCTC CTCTGGGTCG GGGGTCATGC
  CCACAGCAGC GACAGCCAGG TAGCGGGACG TGGGTGGGCT AAAGCCTAAC GGGTGGTGTG
  CATGACTTAA CTTGATCCTC                                            
  
  M = A/C
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss46736232	NES10988703	PERLEGEN	MM_PANEL2	f	SNP	A	C	C	C	C	C	C	C	C	C	C	C	C	C	A
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs32840263					SNP	A	C	C	C	C	C	C	C	C	C	C	C	C	C	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss46736232	NES10988703	PERLEGEN	MM_PANEL	f	SNP	A/C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:152181225 () rs orientation: forward

Symbol	Name	Function Class
Cpgi15387	CpG island 15387	within coordinates
Plekhg5	pleckstrin homology domain containing, family G (with RhoGef domain) member 5	within coordinates
Rr377434	regulatory region 377434	46 bp upstream
Rr605737	regulatory region 605737	589 bp distal
Rr605738	regulatory region 605738	39 bp distal
Rr605739	regulatory region 605739	450 bp distal
Rr605740	regulatory region 605740	901 bp proximal
Rr605741	regulatory region 605741	1408 bp proximal
Tssr40496	transcription start site region 40496	52 bp downstream
Tssr40497	transcription start site region 40497	within coordinates