rs32840962 SNP Detail

Summary

• ID
  rs32840962
• Variation Type
  SNP
• Alleles
  A/C

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr1:36632933 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CTATAGACTT TGAAGACAAA
  GCTTGTCTTT GGAAGGTTCT GGACTATACT CATCTGCTGT GGCAATTCCT TTGTCAAAAA
  TTTAGGTGTA TTCATGATGC CGTGGTTCAC ACTAAAAGTA TATACATATA CACATACATA
  CATACATACA TACATGCCTC ACAGGGGCTC TATCTTTCAG AAATACCATA TGAAATAAAA
  M
  GACAAGAAGT CTTGGGGTGA CCTGGGGTGA GGGGAGTGCC AGCAGGATCC ACAGTGGCCA
  CAGAGGGCTC TCTACTTCTG GACTTATCTG AACTTTCCCA AATAATCTTA GGCTCAGGCC
  AAGGAGACGG CTCAGTGGGT CTCAATGGGT AAAGGCACCA CCACCAGGCT GATGACCTGA
  GTTAGATCCC CAGAGGCTGC                                            
  
  M = A/C
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	WSB/EiJ
ss47221154	NES11093351	PERLEGEN	MM_PANEL2	f	SNP	C	C	C	C	C	C	C	C	C	A	C	C	C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	WSB/EiJ
rs32840962					SNP	C	C	C	C	C	C	C	C	C	A	C	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss47221154	NES11093351	PERLEGEN	MM_PANEL	f	SNP	A/C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr1:36632933 () rs orientation: forward

Symbol	Name	Function Class
Fam178b	family with sequence similarity 178, member B	within coordinates
Rr409369	regulatory region 409369	405 bp distal
Rr409370	regulatory region 409370	1573 bp proximal
Rr409371	regulatory region 409371	1951 bp proximal
Tssr11268	transcription start site region 11268	514 bp upstream