rs32841263 SNP Detail

Summary

• ID
  rs32841263
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr4:152182359 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CAAATTGGCC AGAAGGAATA
  GAATGAAATC CCCACCCCCA ACCCCTGCGC TCAACACACA CACACACACA CACACACACA
  CACACACACA CACACACACA CACAATGTGG CTCTGGTTGT CCTGGAACTC CTGTATATAT
  CAGGCTGGTC TTAAACTTAC AGAGTTCCCT GCCTCTGCCT CTGGAGTGCT AGGATTAAGG
  Y
  GCTTGAGGTG CTGTCTTTAT GTTGACTAAA TTAAAAAGAA AATTGTGTCC CTTAATTAGG
  CCCTCCTCTC CGGAACCTAC AGTTTAGCTC AGTCTCCACT GTGTCCACTG AGACCAGAAC
  CTTGGCTTGG CTGGAATGTA GCCACACCTG GCATTGACTG CCGGAAGCTC TCCTAGTCAG
  CAGGGGGCTG AAGCAGGGAG                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss46736244	NES10988622	PERLEGEN	MM_PANEL2	f	SNP	C	C	C	C	C	C	C	C	C	C	T	C	C	T	C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs32841263					SNP	C	C	C	C	C	C	C	C	C	C	T	C	C	T	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss46736244	NES10988622	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:152182359 () rs orientation: forward

Symbol	Name	Function Class
Cpgi15387	CpG island 15387	952 bp distal
Plekhg5	pleckstrin homology domain containing, family G (with RhoGef domain) member 5	within coordinates
Rr377434	regulatory region 377434	within coordinates
Tssr40496	transcription start site region 40496	1186 bp downstream
Tssr40497	transcription start site region 40497	1120 bp downstream