rs32841979 SNP Detail

Summary

• ID
  rs32841979
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr4:152182608 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CCCTTAATTA GGCCCTCCTC
  TCCGGAACCT ACAGTTTAGC TCAGTCTCCA CTGTGTCCAC TGAGACCAGA ACCTTGGCTT
  GGCTGGAATG TAGCCACACC TGGCATTGAC TGCCGGAAGC TCTCCTAGTC AGCAGGGGGC
  TGAAGCAGGG AGCCCTGGCC AGGCTGGTGG AGTAGGTAGT GCCTGGGAAA AGGGATTGAA
  R
  GGAAAGCTGG TGCCTCCGCA GACTGTTGTC AGAAGGAGGC ACTTAAAGCT GGGAGGCCCC
  CCCCAGATTT CTCTACATGC CCTGGGACTC ATGGCTGTAG GTAGGTAAAT GTTTTCCTGC
  CTTTATCTGC AGTAGATTAA AACAGGAACT GAAAATATTT CCAAGTCTTG ACCACCCGCT
  GTTAGGAATC TGGGTCCTTA                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss46736250	NES10988624	PERLEGEN	MM_PANEL2	f	SNP	G	G	G	G	G	G	G	G	G	G	A	G	G	G	G
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs32841979					SNP	G	G	G	G	G	G	G	G	G	G	A	G	G	G	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss46736250	NES10988624	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:152182608 () rs orientation: forward

Symbol	Name	Function Class
Cpgi15387	CpG island 15387	1201 bp distal
Plekhg5	pleckstrin homology domain containing, family G (with RhoGef domain) member 5	within coordinates
Rr377434	regulatory region 377434	within coordinates
Rr605737	regulatory region 605737	1972 bp distal
Rr605738	regulatory region 605738	1422 bp distal
Rr605739	regulatory region 605739	1833 bp distal
Rr605740	regulatory region 605740	within coordinates
Rr605741	regulatory region 605741	25 bp proximal
Tssr40496	transcription start site region 40496	1435 bp downstream
Tssr40497	transcription start site region 40497	1369 bp downstream