rs32842075 SNP Detail

Summary

• ID
  rs32842075
• Variation Type
  SNP
• Alleles
  A/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr3:86742881 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CTAAAACTGC AATTCCAAAC
  AGTTGTGAGT CCCTCAATGA AGATCCTAGG AATCGCACTG GGCCCTCAGT AAAAGCAGAA
  TGGGCTCTTA ACTAACTGCT GAGCCACTTC TTGAGACCAG GCATTCTCTG AGTGATATAC
  TTCTATCACC CATCTCAAGC TGTAAAAGAC ATCTTGCTCA TTTATAAAAG AGTGAGATCA
  W
  AGCTCTAATC CCTCTTTCCT TTGTAAAATA TACCTACTTG AATTTCACTC ACTTAAAAAC
  TAGGTTGAAA CCAAAAAAAA AAAAAAAAAA AAGCTGGGCG TGGCTTTAAT CCCAGCACTC
  GGGAGGCAGA GGCAGGCGGA TTTCTAAGTT CGAGGCCAGC CTGATCTACA AAGTGAGCTC
  CAGGACAGCC AGGGCTATAC                                            
  
  W = A/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	BALB/cByJ	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	NOD/ShiLtJ	NZW/LacJ
ss46736147	NES10752127	PERLEGEN	MM_PANEL2	f	SNP	T	T	T	T	A	T	T	T	T	T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	BALB/cByJ	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	NOD/ShiLtJ	NZW/LacJ
rs32842075					SNP	T	T	T	T	A	T	T	T	T	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss46736147	NES10752127	PERLEGEN	MM_PANEL	f	SNP	A/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:86742881 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Dclk2	doublecortin-like kinase 2			Intron
				Noncoding-Transcript-Variant
Rr579396	regulatory region 579396			1906 bp distal
Rr579397	regulatory region 579397			205 bp distal
Rr579398	regulatory region 579398			1862 bp proximal