rs32842788 SNP Detail

Summary

• ID
  rs32842788
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr3:86743755 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CCTAAATTGG GAGCTTTCAT
  TTCAGGAGCT ACAAAGATGG TCAATGAATT GTCTCACCGC TATGATCCAG GACAAAGTCA
  TCTTGGGCAT AACGATATTT TTCAGGTCCA CATGCAATAA AAACATCATC GTCTCCAAAA
  AAGTCTTGCA GACAAGTAAC CTGGAAAAAA AAAATCCAAG AAATTAGAAA CATTAGAGCG
  Y
  AATAAAAATC AGCAAAATTA AACGCATGTT CAAGCTTTAC CCACAGCACT GTAGAGGGAC
  AGAGGCCTGT CCACTGAGGT ACGCACCACC TTTATCAAGG CTGGGGAAGA CTGGCCGTGA
  CACTGGCCAA TGACACTAAG ACTACAAGGC TCAACTCTCC TCTGTTGTCT AAATTACATC
  TTCAGTTTTT TAAAAAGTTC                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss46736162	NES10752094	PERLEGEN	MM_PANEL2	f	SNP	C	C	C	C	C	T	C	C	C	T	C	C	T	C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs32842788					SNP	C	C	C	C	C	T	C	C	C	T	C	C	T	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss46736162	NES10752094	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:86743755 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Dclk2	doublecortin-like kinase 2			Intron
				Noncoding-Transcript-Variant
Rr579397	regulatory region 579397			1079 bp distal
Rr579398	regulatory region 579398			988 bp proximal