rs32842941 SNP Detail

Summary

• ID
  rs32842941
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr2:152650848 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GTGGCAATCT GTAATGGAGG
  GCTTTTCCAC TGTGTACAAG TTCCTCAAAA TAATGATTCT GAGACTTGCT ATTTCATGAA
  GAAACGCTTA GGCCAATAGC TTAGGCTTGT TCCCTGGCTG AGTTGTAACT TACTTATCCA
  TTCATTCTAA TCTACGTCCC ACCATGTGGC TGGTTACCTC TCCTCAGCTT CATATGACCG
  Y
  CTATCTCCAT CAGTATTTGG GGAGAATCTC CCCACTTATT CTATTCTGAG GGCCAAATGA
  CTGGTTACCT TCTTCTCAGT TTACTCATCC CTGACTCTTT CCCAGAATTC TTCTTTCTCT
  CTGCTGGTAC TCCCACCTCC TATTTCCTGC CTCAGCTCAT TGGTCACAGG CGATTTTTTA
  CTGACAGGTA ATGCTTCCAT                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129X1/SvJ	A/J	C57BL/6J	DBA/2J
ss45201583	mCV27575687	ABI	CRAMUS_MOUSE	f	SNP	T	T	C	T	T
ss147974812	ENSMUSSNP5888274	ENSEMBL	ENSEMBL_Sanger	f	SNP		T	C		T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129X1/SvJ	A/J	C57BL/6J	DBA/2J
rs32842941					SNP	T	T	C	T	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:152650848 () rs orientation: forward

Symbol	Name	Function Class
A630035D09Rik	RIKEN cDNA A630035D09 gene	within coordinates
Bcl2l1	BCL2-like 1	within coordinates
Rr374093	regulatory region 374093	within coordinates
Rr567478	regulatory region 567478	187 bp distal
Rr567479	regulatory region 567479	1223 bp proximal
Tssr20835	transcription start site region 20835	1540 bp upstream