rs32843461 SNP Detail

Summary

• ID
  rs32843461
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  138
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr8:70356350 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        CCTAA AAGTTCTATA GTCATCCGCC
  R
  GGATCTGATG ATACTTGAAT TGGGA                                      
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/J	C57BL/6J	DBA/2J	LG/J	SM/J
ss46199062	mCV22895350	ABI	CRAMUS_MOUSE	f	SNP	A	A	G
ss145115950	ENSMUSSNP3657240	ENSEMBL	ENSEMBL_Sanger	f	SNP	A		G
ss322697769	CHEV_8_72427599	CHEVERUD	SCREENING_POP	f	SNP				G	G
SNP Consensus Information
SNP					Consensus Type	A/J	C57BL/6J	DBA/2J	LG/J	SM/J
rs32843461					SNP	A	A	G	G	G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr8:70356350 () rs orientation: forward

Symbol	Name	Function Class
Cpgi20428	CpG island 20428	109 bp distal
Ndufa13	NADH:ubiquinone oxidoreductase subunit A13	1142 bp upstream
Rr400887	regulatory region 400887	1869 bp downstream
Rr400888	regulatory region 400888	217 bp downstream
Rr664595	regulatory region 664595	1506 bp distal
Rr664596	regulatory region 664596	498 bp distal
Rr664597	regulatory region 664597	991 bp distal
Rr664598	regulatory region 664598	872 bp distal
Rr664599	regulatory region 664599	503 bp proximal
Tssk6	testis-specific serine kinase 6	182 bp downstream
Tssr2594	transcription start site region 2594	1904 bp downstream
Tssr77689	transcription start site region 77689	1506 bp downstream
Tssr81546	transcription start site region 81546	1693 bp upstream
Tssr81547	transcription start site region 81547	1676 bp upstream
Tssr81548	transcription start site region 81548	478 bp upstream