rs32843881 SNP Detail

Summary

• ID
  rs32843881
• Variation Type
  SNP
• Alleles
  G/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr1:36630627 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CTCCCACAAC CTCCCAGTGA
  AGGGTCAGAG TGTCTCACCT ACACATCTTC CAGTACAGTG GTGGGTGTGC ATGTGTGCAT
  GTGTGCGTGT GTGTCGAGGA GAGCAAGCAG AGGAGCTGAC CCTCACTCCA CACTGCCAGA
  GCTGTCATAT ATCACTTCCA CTCTGAGACT TCAGCCCCTC CAACCACTTC TGATTCCATA
  K
  ATAAAACCAT TTCTCTTGCC ACAAAGATGA CAGAAGTGAA ACAGGAAGGA TGAAGTTTTG
  AAATTTCACA ACCAGCCCCT AAATAGCACC CCTTACTTCA AAGACAGAGG TGCAGGTGCA
  GCCCTCTGAG GGCCACACAT TCCCTGGCAG TCCTGTCTCC CACCCAGGCT GCTTGCTTTG
  CTTTGTGCTC TGCTTTCCAG                                            
  
  K = G/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	PWD/PhJ	WSB/EiJ
ss47221100	NES11093595	PERLEGEN	MM_PANEL2	f	SNP	G	G	G	G	G	T	G	G	G	T	G	T	G
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	PWD/PhJ	WSB/EiJ
rs32843881					SNP	G	G	G	G	G	T	G	G	G	T	G	T	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss47221100	NES11093595	PERLEGEN	MM_PANEL	f	SNP	G/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr1:36630627 () rs orientation: forward

Symbol	Name	Function Class
Fam178b	family with sequence similarity 178, member B	within coordinates
Rr409366	regulatory region 409366	1517 bp distal
Rr409367	regulatory region 409367	488 bp distal
Rr409368	regulatory region 409368	within coordinates
Rr409369	regulatory region 409369	1472 bp proximal
Tssr11268	transcription start site region 11268	1769 bp downstream