rs32844037 SNP Detail

Summary

• ID
  rs32844037
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  138
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr4:8821339 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        TAGAA GAGTCATAGA TCCAAGTATG
  Y
  CCCATTCTTC CTTTCTTAAA GATGA                                      
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	C57BL/6J	LG/J	SM/J
ss45701962	mCV23779506	ABI	CRAMUS_MOUSE	f	SNP	T	T	C
ss145983612	ENSMUSSNP2900752	ENSEMBL	ENSEMBL_Sanger	f	SNP	T	T
ss321038204	CHEV_4_8748486	CHEVERUD	SCREENING_POP	f	SNP				T	C
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	C57BL/6J	LG/J	SM/J
rs32844037					SNP	T	T	C	T	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:8821339 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Chd7	chromodomain helicase DNA binding protein 7			Intron
				Noncoding-Transcript-Variant
Tssr1116	transcription start site region 1116			796 bp upstream
Tssr36434	transcription start site region 36434			432 bp upstream
Tssr36435	transcription start site region 36435			444 bp upstream
Tssr36436	transcription start site region 36436			1443 bp upstream
Tssr36437	transcription start site region 36437			1470 bp upstream
Tssr40890	transcription start site region 40890			1288 bp downstream
Tssr40891	transcription start site region 40891			1902 bp downstream