rs32844054 SNP Detail

Summary

• ID
  rs32844054
• Variation Type
  SNP
• Alleles
  G/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  138
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr2:164117636 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        GGGGT TTGAAGCCCC ACTAGCAAAA
  K
  GGTCAAGAGG AGATTGGGGT TAGTG                                      
  
  K = G/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129X1/SvJ	A/J	C57BL/6J	DBA/2J	LG/J	SM/J
ss45202335	mCV23736641	ABI	CRAMUS_MOUSE	f	SNP	G	G	T	G	G
ss148221274	ENSMUSSNP4196737	ENSEMBL	ENSEMBL_Sanger	f	SNP		G	T
ss320605183	CHEV_2_164101452	CHEVERUD	SCREENING_POP	f	SNP						G	T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129X1/SvJ	A/J	C57BL/6J	DBA/2J	LG/J	SM/J
rs32844054					SNP	G	G	T	G	G	G	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:164117636 () rs orientation: forward

Symbol	Name	Function Class
D2Mit29	DNA segment, Chr 2, Massachusetts Institute of Technology 29	1396 bp proximal
Svs4	seminal vesicle secretory protein 4	240 bp downstream
Tssr21549	transcription start site region 21549	236 bp upstream
Tssr21550	transcription start site region 21550	342 bp upstream
Tssr21551	transcription start site region 21551	1386 bp upstream
Tssr21552	transcription start site region 21552	1430 bp upstream
Tssr27409	transcription start site region 27409	262 bp downstream
Tssr27410	transcription start site region 27410	285 bp downstream
Tssr27411	transcription start site region 27411	322 bp downstream
Tssr27412	transcription start site region 27412	360 bp downstream
Tssr27413	transcription start site region 27413	367 bp downstream
Tssr27414	transcription start site region 27414	385 bp downstream
Tssr27415	transcription start site region 27415	401 bp downstream
Tssr27416	transcription start site region 27416	1361 bp downstream
Tssr27417	transcription start site region 27417	1370 bp downstream
Tssr27418	transcription start site region 27418	1441 bp downstream
Tssr27419	transcription start site region 27419	1451 bp downstream
Tssr27420	transcription start site region 27420	1471 bp downstream
Tssr27421	transcription start site region 27421	1495 bp downstream
Tssr27422	transcription start site region 27422	1513 bp downstream
Tssr27423	transcription start site region 27423	1551 bp downstream
Tssr27424	transcription start site region 27424	1581 bp downstream
Tssr27425	transcription start site region 27425	1602 bp downstream
Tssr27426	transcription start site region 27426	1860 bp downstream