rs32844614 SNP Detail

Summary

• ID
  rs32844614
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr3:86741366 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CCATACAACT TCACCGTGTA
  AAGATGGTGC TACAAAGCTG ACAACAGCAA AAACAGCAAG ACACACAGGG ACCCCAGGCT
  ATGTGACACA TTAATTCAGT TAATCTTTGA AAAGTTTTAT AAGATATCCT TATCACTCCC
  ATTTTGAAGA AGATTAAATA AATACATATT GGAGATGGGG TAAAAACTAA CAGGACGCAT
  Y
  TTTTAAAATC TATTAGAGGC CTTCTTCATC AGCCACTACA AAGAGCCAGA TAATCCAACT
  CGCTCAGATA AAGCAACGGC AGCCCTGCCT ATACACAGAG TGAGCACTTA CCAATGTCTC
  GTTATTGCTA CCATCAGCAC CACCATGGTG ACTACAGTGA CTAAGTCACT GCCATCTTCA
  CTGATTAGAG CTTTGTTGAT                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/J	CAST/EiJ	DBA/2J	FVB/NJ	MOLF/EiJ	NOD/ShiLtJ	PWD/PhJ	WSB/EiJ
ss46736120	NES10752232	PERLEGEN	MM_PANEL2	f	SNP	T	T	T	T	C	T	C	T
SNP Consensus Information
SNP					Consensus Type	A/J	CAST/EiJ	DBA/2J	FVB/NJ	MOLF/EiJ	NOD/ShiLtJ	PWD/PhJ	WSB/EiJ
rs32844614					SNP	T	T	T	T	C	T	C	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss46736120	NES10752232	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:86741366 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Dclk2	doublecortin-like kinase 2			Intron
				Noncoding-Transcript-Variant
Rr579396	regulatory region 579396			391 bp distal
Rr579397	regulatory region 579397			1289 bp proximal