rs32845516 SNP Detail

Summary

• ID
  rs32845516
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr1:36631232 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                    TGGTCCTTC TCATTCTTCT AGTTCAAGGC
  TCAGCAAAGC CAACTAACCC TTAACCCCTT gggtggggat ggggtggggt ggagtggggG
  TACTTGGTGC AAGGCACATC AGCCTGAGCC TAGTCAATCA GGTGAAGATA GGGGAATGAA
  R
  CCTCTCCAGG AAACCAGAAG CAGACACTCA GTATAAGTTC AGATGGCTGC ACAGTTTTAG
  GATGTGGCAG ATATGAGGGC ATCCACAGGG GATGGGGGAC AGGAATGGCA GGGGACAGGA
  ATGGCGGAGC ACAGGTACAA GTTTGAGAGA                                 
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
ss47221118	NES11093602	PERLEGEN	MM_PANEL2	f	SNP	G	A	G	G	G	A	G	G	G	G		G	G	A	G		G
ss319689119	CHEV_1_36648996	CHEVERUD	SCREENING_POP	f	SNP											A					A
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
rs32845516					SNP	G	A	G	G	G	A	G	G	G	G	A	G	G	A	G	A	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss47221118	NES11093602	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr1:36631232 () rs orientation: forward

Symbol	Name	Function Class
Fam178b	family with sequence similarity 178, member B	within coordinates
Tssr11268	transcription start site region 11268	1164 bp downstream