rs32845550 SNP Detail

Summary

• ID
  rs32845550
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr4:152179169 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GAGCCAATAA GTGTCACTAA
  GGCCACTGGT CTCTGGCAGG AAGGAATGAT GGAAAGCAAG GAAGTCACGT GATTAGAGAG
  CCGAGAAGGA ATTAATTCAA CGTTGCGGAC TCGGAGAACG AGGCAGAGGG GTTATTTTGA
  GAGCCCTTTG TGGGAGGTGG GATTGGGGCC CAATGACAAC CATTTGAAGG TTGAGCACAT
  R
  CAGTCCTGGA TAGAGCGTGG TGGGGTGAGG GCTCCGAGCT CGGAGAGGCA CAGGATATCA
  GCCCGAAGGC CAGAGGACGA ACGGCTGCAT GAGTCCAGCC AGGAGGCGAA GAGGGAACGA
  GGTTATGGTG GATATTTAAA AAAATAAGAT AAGAAATTTT AGTTTTCAAG GGAGTTACTT
  GTGTTGTCCA TGGTGAGTGA                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss46736205	NES10988778	PERLEGEN	MM_PANEL2	f	SNP	A	A	A	A	A	A	G	A	A	A	G	A	A	G	G
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs32845550					SNP	A	A	A	A	A	A	G	A	A	A	G	A	A	G	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss46736205	NES10988778	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:152179169 () rs orientation: forward

Symbol	Name	Function Class
Cpgi15387	CpG island 15387	1978 bp proximal
Plekhg5	pleckstrin homology domain containing, family G (with RhoGef domain) member 5	within coordinates
Rr605736	regulatory region 605736	1039 bp distal
Rr605737	regulatory region 605737	1446 bp proximal
Rr605738	regulatory region 605738	1517 bp proximal
Rr605739	regulatory region 605739	1585 bp proximal
Tssr40496	transcription start site region 40496	1986 bp upstream