rs32845943 SNP Detail

Summary

• ID
  rs32845943
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr4:152237395 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              AGAGCACTGA CTGCTCTTCC
  CAAGGTCCTG AGTTCAATTC CCAGCAACCA CATGGTGGCT CACAGCCATG TATAATGGGG
  ATCCGATGCC CTCTTCCTGT GTGTCTGAAG ACAGCAACAA TGTACTCACA TACATGAAAT
  AAATTATTTT AAAAAAGAAA GAAAGAAAAT ATTTTGTCAC AGGCATCAAG AAGGTGCCCG
  R
  TGCTTGGTCT GGTTGGTAAG AAGGGACGTT CAAAGCCAGG GAACTAGACG CCACTGCCCA
  GAAGTTTAAA AAGTCCCACC AAGTGCAGAA TGCAACTGCC CTCATGCTCA GGACTTCAAG
  GTTCCTCTAG AGTACAAAGT CTAGACCCAA GAAAAAGATG GGAGATGGGA GAAAGCAGAA
  AGAGAAAGTA AGGAGGGAGT                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/J	CAST/EiJ	DBA/2J	FVB/NJ	NOD/ShiLtJ	WSB/EiJ
ss46736856	NES10986684	PERLEGEN	MM_PANEL2	f	SNP	A	G	A	A	A	A
SNP Consensus Information
SNP					Consensus Type	A/J	CAST/EiJ	DBA/2J	FVB/NJ	NOD/ShiLtJ	WSB/EiJ
rs32845943					SNP	A	G	A	A	A	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss46736856	NES10986684	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:152237395 () rs orientation: forward

Symbol	Name	Function Class
Cpgi15395	CpG island 15395	384 bp distal
Cpgi15396	CpG island 15396	619 bp proximal
Espn	espin	567 bp upstream
Rr398896	regulatory region 398896	842 bp upstream
Rr605762	regulatory region 605762	217 bp distal
Rr605763	regulatory region 605763	97 bp distal
Rr605764	regulatory region 605764	405 bp proximal
Rr605765	regulatory region 605765	1032 bp proximal
Tssr44823	transcription start site region 44823	541 bp upstream