rs32846111 SNP Detail

Summary

• ID
  rs32846111
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr4:108690878 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        GACCGCGGCG GCAGCGGCGG CGGCGGCGGG AGAGGCCCAC
  GTGACGCACG GCCCCGCCTC GACCGCGGGA GGGAGGCGGG GTGGGGGTGG GTACGGCAAC
  Y
  GCGCGCCTGC CTCCCGACTA CAAAGCCCAG CATGCCTCGC GCACCTCACT ATTCTGATTG
  GCGGCCGGGC TGCTTCCTGG AGGAGGCGGC GGTCCCCTT                       
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	C57BL/6J	DBA/2J
ss45702078	mCV23912991	ABI	CRAMUS_MOUSE	f	SNP	T	T	T	C
ss147191109	ENSMUSSNP5473777	ENSEMBL	ENSEMBL_Sanger	f	SNP	T	T		C
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	C57BL/6J	DBA/2J
rs32846111					SNP	T	T	T	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:108690878 () rs orientation: forward

Symbol	Name	Function Class
Btf3l4	basic transcription factor 3-like 4	67 bp upstream
Cpgi14564	CpG island 14564	within coordinates
Cpgi14565	CpG island 14565	981 bp proximal
Rr376990	regulatory region 376990	within coordinates
Rr597224	regulatory region 597224	138 bp distal
Rr597225	regulatory region 597225	within coordinates
Rr597226	regulatory region 597226	430 bp proximal
Tssr38313	transcription start site region 38313	929 bp upstream
Tssr38314	transcription start site region 38314	966 bp upstream
Tssr38315	transcription start site region 38315	1028 bp upstream
Tssr38316	transcription start site region 38316	1121 bp upstream
Tssr42738	transcription start site region 42738	84 bp upstream
Tssr42739	transcription start site region 42739	55 bp upstream
Tssr42740	transcription start site region 42740	558 bp downstream
Txndc12	thioredoxin domain containing 12 (endoplasmic reticulum)	997 bp upstream