rs32846283 SNP Detail

Summary

• ID
  rs32846283
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr4:152180369 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TCTTCCCACC TCAAGGTCTG
  GATCAAAGAC ATACCTCTTC CTACCGCAAG GGTCTGGACT AGAAGTGAGT TTACCCACTT
  TGAACCAAGC CCCCCTCCCA AAAAAAAAAT CTCTCGCAGG TGTGTCCTCC ATTTCTGGAT
  TGTAGGTCAC TCTATAGAGC TATATTGTGG TCAAGTTGAA TGACCTAGAA GAGCCATCAC
  Y
  GTGGTAATCA CAGTTTAGTG GAGATGCAAG CAGATCAGAA GTTTAAGGTC TGTGAGACTG
  TCACAGGCCA GTCTGGGTTT AACTAACAGG TTGTGCACTT GTCTCTGTAT GTCTACATTA
  ACTGTAGGAG ATGGAAAGGG ATAAGGTGGC CACCCCACTT CCTGGGGGTG AGTGTTGAAG
  CCCTTTGATA ACCACACTGG                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	PWD/PhJ	WSB/EiJ
ss46736220	NES10988698	PERLEGEN	MM_PANEL2	f	SNP	T	T	T	T	C	T	T	T	C	C	T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	PWD/PhJ	WSB/EiJ
rs32846283					SNP	T	T	T	T	C	T	T	T	C	C	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss46736220	NES10988698	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:152180369 () rs orientation: forward

Symbol	Name	Function Class
Cpgi15387	CpG island 15387	778 bp proximal
Plekhg5	pleckstrin homology domain containing, family G (with RhoGef domain) member 5	within coordinates
Rr377434	regulatory region 377434	902 bp upstream
Tssr40496	transcription start site region 40496	786 bp upstream
Tssr40497	transcription start site region 40497	824 bp upstream