rs32846566 SNP Detail

Summary

• ID
  rs32846566
• Variation Type
  SNP
• Alleles
  G/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr4:152237841 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CTGAGTTCGA TCCCAGGGAC
  CCACATGATG GAAGGAGAGC CTGAGCTACC GAAAGTTGTC TTCTGCCCCC ACATGCGCAG
  TGTAGCAATG GCCCCCAAGT AAATAAACAC AATGATTAGA GGGGGGGACC CTCAAAACTC
  ATATGATCTA TTTCTTTCTT AAGTAAAAGG AAGTTAGGAC TTAGAACTGT TTGGACCAGG
  K
  TGTGGATGAC TCTGATTACT CAGGTTGGTG TGTGTGTGTG TGTGTGTGTG TGTGTGTGTG
  TGTGTGGTGG TGGTGGTGGT GGTGGTGGGG AGTGGACTTG AAGGCCTGGG CCTGCCAAAC
  TAAGGACCAG AAAAGGAGGA CGTGAGGGCT GGAGGCTATT GGAGAGACGC TCCAGCGCCT
  TCGTGCAAAG AATCGCTATT                                            
  
  K = G/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	CAST/EiJ	DBA/2J	FVB/NJ	NOD/ShiLtJ	WSB/EiJ
ss46736859	NES10986664	PERLEGEN	MM_PANEL2	f	SNP	G	G	T	G	G	G	G
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	CAST/EiJ	DBA/2J	FVB/NJ	NOD/ShiLtJ	WSB/EiJ
rs32846566					SNP	G	G	T	G	G	G	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss46736859	NES10986664	PERLEGEN	MM_PANEL	f	SNP	G/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:152237841 () rs orientation: forward

Symbol	Name	Function Class
Cpgi15395	CpG island 15395	830 bp distal
Cpgi15396	CpG island 15396	173 bp proximal
Espn	espin	1013 bp upstream
Rr398896	regulatory region 398896	396 bp upstream
Rr605762	regulatory region 605762	663 bp distal
Rr605763	regulatory region 605763	543 bp distal
Rr605764	regulatory region 605764	within coordinates
Rr605765	regulatory region 605765	586 bp proximal
Rr605766	regulatory region 605766	1802 bp proximal
Tssr44823	transcription start site region 44823	987 bp upstream