rs32851144 SNP Detail

Summary

• ID
  rs32851144
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  138
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr8:68513970 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        ATTGC AGAATGTATT GCCAAAATCT
  Y
  ACTTACATTG ATTTTCCAAA TCTAT                                      
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	BTBR T<+> Itpr3/J	C57BL/6J	DBA/2J	LG/J	MOLF/EiJ	NOD/ShiLtJ	SM/J	WSB/EiJ
ss46200685	mCV22628463	ABI	CRAMUS_MOUSE	f	SNP	T	T		C
ss51964641	NES14987260	PERLEGEN	MM_PANEL2	f	SNP			C		T		C	T		T
ss145062363	ENSMUSSNP733714	ENSEMBL	ENSEMBL_Sanger	f	SNP		T
ss322687925	CHEV_8_70585217	CHEVERUD	SCREENING_POP	f	SNP						T			T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	BTBR T<+> Itpr3/J	C57BL/6J	DBA/2J	LG/J	MOLF/EiJ	NOD/ShiLtJ	SM/J	WSB/EiJ
rs32851144					SNP	T	T	C	C	T	T	C	T	T	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss51964641	NES14987260	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr8:68513970 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Cpgi20399	CpG island 20399			505 bp proximal
Psd3	pleckstrin and Sec7 domain containing 3			Intron
				mRNA-UTR
				Noncoding-Transcript-Variant
Rr664367	regulatory region 664367			318 bp proximal
Rr664368	regulatory region 664368			899 bp proximal
Tssr81474	transcription start site region 81474			55 bp downstream
Tssr81475	transcription start site region 81475			928 bp downstream
Tssr81476	transcription start site region 81476			1126 bp downstream