rs32852028 SNP Detail

Summary

• ID
  rs32852028
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr2:156713593 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        GTTAGCTGAT CTACATAGTG AGACCCTATC TCCAAAAAAA
  AAAGTGTAGA TTGGAGAATT GGGGCAGTGC TAGGAATGGA ACTCAAAGTT GAGTGTGTCT
  R
  GAGCACTAGA CAAGTGTTCT GCCATTGCGT TGAGACCCCT GCCCGGTGCT TTAAATGGTT
  TTTGTTGTTG TTGTTGCTTT GGTTTGGTTT TTTTTTTGA                       
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	C57BL/6J	DBA/2J	LG/J	SM/J
ss45203146	mCV25126958	ABI	CRAMUS_MOUSE	f	SNP	A	A	A	G
ss148084836	ENSMUSSNP6198890	ENSEMBL	ENSEMBL_Sanger	f	SNP		A		G
ss320582495	CHEV_2_156697409	CHEVERUD	SCREENING_POP	f	SNP					G	A
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	C57BL/6J	DBA/2J	LG/J	SM/J
rs32852028					SNP	A	A	A	G	G	A

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:156713593 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Rab5if	RAB5 interacting factor			Intron
				Noncoding-Transcript-Variant
Rr568377	regulatory region 568377			814 bp distal
Rr568378	regulatory region 568378			1897 bp proximal
Tssr21217	transcription start site region 21217			825 bp upstream