rs32852380 SNP Detail

Summary

• ID
  rs32852380
• Variation Type
  SNP
• Alleles
  A/C

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  142
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr2:129470013 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        AAATT AAGTCTCTGG GCTAGGGAGG
  M
  GGAGCTGTGC ATTACTGAGT CACCC                                      
  
  M = A/C
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	C57BL/6J	DBA/2J	LG/J	SM/J
ss45202684	mCV24478128	ABI	CRAMUS_MOUSE	f	SNP	C	A	A	A
ss147588670	ENSMUSSNP5938959	ENSEMBL	ENSEMBL_Sanger	f	SNP	C	A
ss320505286	CHEV_2_129453829	CHEVERUD	SCREENING_POP	f	SNP					A	C
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	C57BL/6J	DBA/2J	LG/J	SM/J
rs32852380					SNP	C	A	A	A	A	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:129470013 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Rr564960	regulatory region 564960			1856 bp distal
Rr564961	regulatory region 564961			817 bp distal
Sirpa	signal-regulatory protein alpha			Intron
				Noncoding-Transcript-Variant
Tssr20162	transcription start site region 20162			1888 bp upstream
Tssr20163	transcription start site region 20163			1908 bp upstream
Tssr20164	transcription start site region 20164			1969 bp upstream
Tssr20165	transcription start site region 20165			1999 bp upstream
Tssr26273	transcription start site region 26273			1889 bp downstream
Tssr26274	transcription start site region 26274			1949 bp downstream