rs32853473 SNP Detail

Summary

• ID
  rs32853473
• Variation Type
  SNP
• Alleles
  G/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr4:152390336 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              ATAATGAAAT CTTAGGATGA
  GAACCGGGTT TCTGTGTGTT AGAAAGCAGT GTGTGCTAAC ATGTGTCCAA AAAAACATTC
  TGCCAGCTCG CAAGTAATTT ATTTTTAGAT TTTATGGCTT AATTTTGTTG TTGTTGTTGT
  TGTTCTATAT ACCAAAGAGG CTTACGGGTT TGCCAGTTAC AGTGTGAGGC CAGTTAGTTG
  K
  CTCGGAAGCC GCCAGCCTTC GGGACCTGAG GCTTGCAGGC TCCGTGGCAG CCATGGCTGT
  TGTCCACACC AAACTGCCCA GGAATAAGTA TGGTGATATG AGTGGAGACA GTCCACACTT
  CCCATAGCCA GTCCCACTCG CTAGGCTGCA AACGGGAGGA AATGGATTTG TGGCATCATC
  CCCAGCTCTT TATCAGTGCA                                            
  
  K = G/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss46738005	NES11004698	PERLEGEN	MM_PANEL2	f	SNP	G	G	G	G	G	G	T	G	G	G	G	G	G	G	G
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs32853473					SNP	G	G	G	G	G	G	T	G	G	G	G	G	G	G	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss46738005	NES11004698	PERLEGEN	MM_PANEL	f	SNP	G/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:152390336 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Gm70210	predicted gene, 70210			581 bp upstream
Icmt	isoprenylcysteine carboxyl methyltransferase			Intron
				mRNA-UTR
				Noncoding-Transcript-Variant
				Noncoding-Transcript-Variant
Rnf207	ring finger protein 207			1140 bp downstream
Rr605837	regulatory region 605837			810 bp distal
Tssr44828	transcription start site region 44828			609 bp upstream
Tssr44829	transcription start site region 44829			596 bp upstream