rs32853754 SNP Detail

Summary

• ID
  rs32853754
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  138
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr4:155926279 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        TCCAT TGGGACCGAC AGCTACCTGG
  R
  GTGTCACACG ACCGCGCCGA CCGCC                                      
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	C3H/HeJ	C57BL/6J	CAST/EiJ	DBA/2J	KK/HlJ	LG/J	NOD/ShiLtJ	PWD/PhJ	SM/J	WSB/EiJ
ss45703819	mCV24238773	ABI	CRAMUS_MOUSE	f	SNP		A	A				G		A
ss46784481	NES10993771	PERLEGEN	MM_PANEL2	f	SNP	A		A	A	A	A		G	A	G		A	G		A
ss148117690	ENSMUSSNP3148377	ENSEMBL	ENSEMBL_Sanger	f	SNP			A						A
ss321443288	CHEV_4_155215931	CHEVERUD	SCREENING_POP	f	SNP											G			A
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	C3H/HeJ	C57BL/6J	CAST/EiJ	DBA/2J	KK/HlJ	LG/J	NOD/ShiLtJ	PWD/PhJ	SM/J	WSB/EiJ
rs32853754					SNP	A	A	A	A	A	A	G	G	A	G	G	A	G	A	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss46784481	NES10993771	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:155926279 () rs orientation: forward

Symbol	Name	Function Class
Cpgi15490	CpG island 15490	within coordinates
Gm68629	predicted gene, 68629	within coordinates
Mxra8	matrix-remodelling associated 8	within coordinates
Mxra8os	matrix-remodelling associated 8, opposite strand	1644 bp upstream
Rr398927	regulatory region 398927	338 bp downstream
Tssr40727	transcription start site region 40727	1998 bp downstream
Tssr40728	transcription start site region 40728	1982 bp downstream
Tssr40729	transcription start site region 40729	714 bp downstream
Tssr40730	transcription start site region 40730	684 bp downstream
Tssr40731	transcription start site region 40731	655 bp downstream
Tssr40732	transcription start site region 40732	647 bp downstream
Tssr40733	transcription start site region 40733	346 bp downstream
Tssr40734	transcription start site region 40734	1229 bp upstream
Tssr44980	transcription start site region 44980	767 bp upstream
Tssr44981	transcription start site region 44981	718 bp upstream