rs32854157 SNP Detail

Summary

• ID
  rs32854157
• Variation Type
  SNP
• Alleles
  G/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  138
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr8:85434979 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        GGCTG AGTAGGAGGA AGGCAGTCTT
  K
  TTGCATCCTT TCTTTCTGTT TGTCC                                      
  
  K = G/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/J	C57BL/6J	LG/J	SM/J
ss46201198	mCV24193647	ABI	CRAMUS_MOUSE	f	SNP	T	G
ss145392394	ENSMUSSNP1040695	ENSEMBL	ENSEMBL_Sanger	f	SNP	T
ss322751411	CHEV_8_87232249	CHEVERUD	SCREENING_POP	f	SNP			T	T
SNP Consensus Information
SNP					Consensus Type	A/J	C57BL/6J	LG/J	SM/J
rs32854157					SNP	T	G	T	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr8:85434979 () rs orientation: forward

Symbol	Name	Function Class
Cpgi20710	CpG island 20710	1147 bp distal
Nfix	nuclear factor I/X	within coordinates
Rr178192	regulatory region 178192	622 bp proximal
Rr187001	regulatory region 187001	within coordinates
Rr187002	regulatory region 187002	421 bp proximal
Tssr78440	transcription start site region 78440	275 bp upstream
Tssr82126	transcription start site region 82126	1834 bp upstream
Tssr82127	transcription start site region 82127	155 bp downstream