rs32854220 SNP Detail

Summary

• ID
  rs32854220
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  138
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr9:64696338 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        TTGGC TAACCACTGA ACATTCTCTC
  Y
  GAGTCCCTAG GATTTTTTTT TTAAA                                      
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/J	CAST/EiJ	DBA/2J	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	SM/J	WSB/EiJ
ss47722460	NES11315931	PERLEGEN	MM_PANEL2	f	SNP	T	T	C	C		T	T	C		C
ss322985856	CHEV_9_64636863	CHEVERUD	SCREENING_POP	f	SNP					T				C
SNP Consensus Information
SNP					Consensus Type	A/J	CAST/EiJ	DBA/2J	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	SM/J	WSB/EiJ
rs32854220					SNP	T	T	C	C	T	T	T	C	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss47722460	NES11315931	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr9:64696338 () rs orientation: forward

Symbol	Name	Function Class
Rr401455	regulatory region 401455	375 bp upstream
Rr681316	regulatory region 681316	69 bp proximal
Rr681317	regulatory region 681317	1639 bp proximal
Tssr2909	transcription start site region 2909	1738 bp downstream
Tssr85622	transcription start site region 85622	593 bp upstream
Tssr85623	transcription start site region 85623	607 bp upstream
Tssr85624	transcription start site region 85624	1900 bp upstream
Tssr90157	transcription start site region 90157	1766 bp downstream