rs32856744 SNP Detail

Summary

• ID
  rs32856744
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr1:36818753 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TCCCTGGGAA GGTGTCTCTG
  ACTGAGACAG TTCAGGTATC TCTGGGAACG GATGGCTTGG CAGTGAACCA GAGGGTGCAC
  GGTTGACGGG GGTTGGGGTG GGTGGGGTGG GGGTTGGGAG TGGAGGGTAG GGGGTGGTGG
  AGCAAGAGAG CCGGGTGTGG CCTGTGTTGG CCCAGTTCCC ACCCAAGCTG TCTGTGGCCT
  Y
  GCACCTGGGC AGGAAGCAGA TTGACGTGGC CATCAAGGTG CTGAAGCAGG GCACAGAGAA
  GGCCGACAAA GATGAGATGA TGCGAGAGGC CCAGATCATG CACCAGCTCG ACAACCCCTA
  CATCGTGCGG CTCATCGGCG TGTGCCAGGC AGAAGCACTC ATGCTGGTCA TGGAGATGGC
  GGGAGGCGGG CCCCTGCACA                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss47223164	NES11113071	PERLEGEN	MM_PANEL2	f	SNP	C	C	C	C	C	C	T	C	C	C	C	C	C	C	C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs32856744					SNP	C	C	C	C	C	C	T	C	C	C	C	C	C	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss47223164	NES11113071	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr1:36818753 () rs orientation: forward

Symbol	Name	Function Class
Cpgi155	CpG island 155	372 bp distal
Tssr42	transcription start site region 42	348 bp upstream
Tssr6286	transcription start site region 6286	274 bp upstream
Tssr6287	transcription start site region 6287	441 bp upstream
Tssr6288	transcription start site region 6288	1423 bp upstream
Zap70	zeta-chain (TCR) associated protein kinase	Intron