rs32856747 SNP Detail

Summary

• ID
  rs32856747
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr1:36818805 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TGGCTTGGCA GTGAACCAGA
  GGGTGCACGG TTGACGGGGG TTGGGGTGGG TGGGGTGGGG GTTGGGAGTG GAGGGTAGGG
  GGTGGTGGAG CAAGAGAGCC GGGTGTGGCC TGTGTTGGCC CAGTTCCCAC CCAAGCTGTC
  TGTGGCCTCG CACCTGGGCA GGAAGCAGAT TGACGTGGCC ATCAAGGTGC TGAAGCAGGG
  Y
  ACAGAGAAGG CCGACAAAGA TGAGATGATG CGAGAGGCCC AGATCATGCA CCAGCTCGAC
  AACCCCTACA TCGTGCGGCT CATCGGCGTG TGCCAGGCAG AAGCACTCAT GCTGGTCATG
  GAGATGGCGG GAGGCGGGCC CCTGCACAAG TTCCTGCTGG GAAAGAAGTG AGCCTGGGGG
  ACACTCACGG GGTGGGGGAG                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss47223167	NES11113073	PERLEGEN	MM_PANEL2	f	SNP	C	C	C	C	C	C	C	C	C	C	C	C	C	C	T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs32856747					SNP	C	C	C	C	C	C	C	C	C	C	C	C	C	C	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss47223167	NES11113073	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr1:36818805 () rs orientation: forward

Symbol	Name	Function Class
Cpgi155	CpG island 155	424 bp distal
Tssr42	transcription start site region 42	296 bp upstream
Tssr6286	transcription start site region 6286	222 bp upstream
Tssr6287	transcription start site region 6287	389 bp upstream
Tssr6288	transcription start site region 6288	1371 bp upstream
Zap70	zeta-chain (TCR) associated protein kinase	within coordinates