rs32857152 SNP Detail

Summary

• ID
  rs32857152
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr2:60554452 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              AAATTCAAAA CCTGACTCCA
  GTTTTGTCAC AGGAGTTCCT CTTCTCTATT AAGCTCCTTT CCTGGGTGGC CTCCCCTGAC
  CTTCCTTCTT CCTGGTGAAA GACTCCACCT CACAGTGCAT GAGGTTCCAC ATATAAGTCA
  GCCATAGGAT GTGCTGAAAC GGAAGAAAAA TTACCTGTGG AGGTTAATCA TCACTGTCAT
  Y
  TTGACTGGAA TTAGAATTAC CCAGGAGAGA CACTTCTGGG CATGTTCGTG TGGGTATTTC
  CAGAGAGGTT TAATGGAGGG AAGAAAATCC ACTCTGAATG TAGGTAGTAC CATTCCATGC
  TCTGGAGTTC TGAGCTGACA AAAGAGACAA GACATAAGCA TCAGCATCCG TCTGGTCCCA
  CTTCCCGATT GTGCTTAGAA                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	C57BL/6J	DBA/2J
ss45203569	mCV23750008	ABI	CRAMUS_MOUSE	f	SNP	C	T	T	T
ss146651394	ENSMUSSNP1113456	ENSEMBL	ENSEMBL_Sanger	f	SNP	C	T		T
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	C57BL/6J	DBA/2J
rs32857152					SNP	C	T	T	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:60554452 () rs orientation: forward

Symbol	Name	Function Class
Itgb6	integrin beta 6	1465 bp upstream
Rr557687	regulatory region 557687	1476 bp distal
Rr557688	regulatory region 557688	975 bp distal
Tssr24212	transcription start site region 24212	1566 bp upstream
Tssr24213	transcription start site region 24213	1451 bp upstream
Tssr24214	transcription start site region 24214	1437 bp upstream