rs32857490 SNP Detail

Summary

• ID
  rs32857490
• Variation Type
  SNP
• Alleles
  A/C

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr1:36820083 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              AAGGGAGACT GACTCCACCA
  TCCCCTCCAC CCCAGGGAGG AGATCCCTGT GAGCAATGTG GCTGAACTGC TGCACCAGGT
  GGCCATGGGC ATGAAGTATT TGGAGGAGAA AAACTTTGTG CACCGCGACC TGGCAGCCCG
  CAATGTTCTA CTGGTCAATC GGCACTATGC CAAGATCAGC GACTTTGGCC TGTCCAAAGC
  M
  CTGGGTGCTG ACGACAGCTA TTACACAGTG AGTGCCACCC CAGTGGTGCC CAGGTGGAGG
  TGGCTGGTGG GGGAGGGTTC CCAAGCTCCG GTCCTAGCAG TTCCTCCCCG TCTCAGGCCC
  GGTCTGCAGG GAAGTGGCCT CTGAAGTGGT ACGCGCCAGA GTGCATCAAC TTTCGGAAGT
  TCTCCAGCCG CAGTGACGTC                                            
  
  M = A/C
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ
ss47223182	NES11112892	PERLEGEN	MM_PANEL2	f	SNP	C	C	C	C	C	C	C	C	C	C	A	C	C	A
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ
rs32857490					SNP	C	C	C	C	C	C	C	C	C	C	A	C	C	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss47223182	NES11112892	PERLEGEN	MM_PANEL	f	SNP	A/C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr1:36820083 () rs orientation: forward

Symbol	Name	Function Class
Cpgi155	CpG island 155	1702 bp distal
Rr409413	regulatory region 409413	1765 bp proximal
Tssr42	transcription start site region 42	971 bp downstream
Tssr6286	transcription start site region 6286	1050 bp downstream
Tssr6287	transcription start site region 6287	878 bp downstream
Tssr6288	transcription start site region 6288	93 bp upstream
Zap70	zeta-chain (TCR) associated protein kinase	Coding-Synonymous