rs32858016 SNP Detail

Summary

• ID
  rs32858016
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr12:98588479 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CTCTTGTGTC ACTTTTCTGC
  ATTCAGTGGA TAATTTTCAC TGACACTTCT AGGCACGTCC AGAGGTAAGC ACCATTTTAG
  GAGCATTCTG TACTGTGAAA TGTACTAGCT ACAAAATAGA AATTAAGTGT ACAATAATAA
  AGCATTAAAA TAAAATGAAC ACAGACTACA TGTTTTATTA GGTCAGATGG TACAGACTGT
  Y
  TATACATAAT TGTTTTTATT TATGTTACCA CCCCAGAGGC TTAGAAATCA TACAACTAGA
  GAGATCTAAC TAAACCATTA AAATAAGAGA AGAGCAGGCT GGGGAGTTGA TTGGCTCAGT
  AGTTAGAAGC ATGTCTTGCT CTTACAAAGG GTTGGAGTTC GAGCCCAGTA CGAACCACAA
  CTGCCTGAAA CTCTAGTTCT                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	WSB/EiJ
ss47222722	NES11204830	PERLEGEN	MM_PANEL2	f	SNP	C	C	C	C	C	C	T	C	C	C	T	C	C	C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	WSB/EiJ
rs32858016					SNP	C	C	C	C	C	C	T	C	C	C	T	C	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss47222722	NES11204830	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr12:98588479 () rs orientation: forward

Symbol	Name	Function Class
Rr387680	regulatory region 387680	542 bp upstream
Rr470931	regulatory region 470931	932 bp distal