rs32858236 SNP Detail

Summary

• ID
  rs32858236
• Variation Type
  SNP
• Alleles
  C/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr1:36820226 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TGTTCTACTG GTCAATCGGC
  ACTATGCCAA GATCAGCGAC TTTGGCCTGT CCAAAGCCCT GGGTGCTGAC GACAGCTATT
  ACACAGTGAG TGCCACCCCA GTGGTGCCCA GGTGGAGGTG GCTGGTGGGG GAGGGTTCCC
  AAGCTCCGGT CCTAGCAGTT CCTCCCCGTC TCAGGCCCGG TCTGCAGGGA AGTGGCCTCT
  S
  AAGTGGTACG CGCCAGAGTG CATCAACTTT CGGAAGTTCT CCAGCCGCAG TGACGTCTGG
  AGCTATGGGG TCACCATGTG GGAGGCCTTC TCCTATGGCC AGAAGCCCTA CAAGGTAGGC
  TGGGCAGTTT GGCAACGGTG GGCTGGGGAG GTGGACCCTG GCTCCTCACA CACGAATGCC
  TTTGTCCCTG GCCTGAGCAG                                            
  
  S = C/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss47223188	NES11112896	PERLEGEN	MM_PANEL2	f	SNP	G	G	G	G	G	G	C	G	G	G	C	G	G	C	G
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs32858236					SNP	G	G	G	G	G	G	C	G	G	G	C	G	G	C	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss47223188	NES11112896	PERLEGEN	MM_PANEL	f	SNP	C/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr1:36820226 () rs orientation: forward

Symbol	Name	Function Class
Cpgi155	CpG island 155	1845 bp distal
Rr409413	regulatory region 409413	1622 bp proximal
Tssr42	transcription start site region 42	1114 bp downstream
Tssr6286	transcription start site region 6286	1193 bp downstream
Tssr6287	transcription start site region 6287	1021 bp downstream
Tssr6288	transcription start site region 6288	33 bp downstream
Zap70	zeta-chain (TCR) associated protein kinase	within coordinates