rs32858698 SNP Detail

Summary

• ID
  rs32858698
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr7:48491535 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              AAAGAGAGGC ATCATGTGAT
  TGTGTTCATG TTCATTTTGA TCGTGGGTTT CAAGGTAATA CAAACAGAAG AAATGTAATA
  TGTTTCATCT GTGAACATGA CAGTGACCTT GTGAAAGGAA TGATGTGGAA CTCTCTGTGC
  AAACAGCCCT GGGTCACATT TCCCATTTCT TATTGCCAGT GATTTCATCG GCATGCCCAG
  Y
  GAGTTTAATG GGAGACTGAT ATGCCTCTTG GGGGAGTATA TGAGTGTGTG TGTGTGTGCG
  TGTGTGTGTG TGTGTGTGTG TGTGTGTGTG TGTGTGTGTG TGTGTGTGTC CATGCATTTG
  TCTAGGTATA TCTTACAAAA TGAGAATGAG ATTACATATA ATACCTCCTC ACCAGCTAAG
  GCAGCTCAAC AGCCTTGTTT                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss48221968	NES11798898	PERLEGEN	MM_PANEL2	f	SNP	C	C	C	C	C	C	T	C	C	C	C	C	C	C	C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs32858698					SNP	C	C	C	C	C	C	T	C	C	C	C	C	C	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss48221968	NES11798898	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr7:48491535 () rs orientation: forward

Symbol	Name	Function Class
Csrp3	cysteine and glycine-rich protein 3	Intron
Rr646923	regulatory region 646923	899 bp distal
Rr646924	regulatory region 646924	528 bp proximal
Tssr72622	transcription start site region 72622	1854 bp downstream
Tssr72623	transcription start site region 72623	1876 bp downstream