rs32859418 SNP Detail

Summary

• ID
  rs32859418
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr7:48492828 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GTCAGTGGAA TCAGATCTGG
  GTCCACTTTC TAGCTTTTTC AACGCTTTGT GGTCCAGGAA AGCCGTTAAC CTCTCCTACC
  GTTAGTATCC TTTCCTAAAT GGGGGCTCTT TGGGAAGTGC TCAGAGAATT GCTTCTGTAT
  GGTACCCAGT AACAGAATGA AAGTTCTAAT TGGTTCTGCT ACCACTCTAA ACTGTCTTGT
  R
  TCATCTGAAT TTTCTAAAAT AAGTCCAAAC TACTTATTGG ACAGCAGTCT GCATTCCCTT
  CCTTTCTTCC TCCCTTCCTC CCTTTCTTCT TCCCTTCATC CTTTTCCACT TCCTCCTCCT
  CCTTTCTCTC TCTTTCTCTT CCTACCCACC CCCCAATCCC TGCAACTAAC TATAAAAGTA
  AAAGATGGTA TTCTAGGACA                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss48221979	NES11798672	PERLEGEN	MM_PANEL2	f	SNP	A		A	A	A	A	A	G	A	A	A	G	A	G	G	A
ss149207706	ENSMUSSNP6277058	ENSEMBL	ENSEMBL_Sanger	f	SNP		G
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs32859418					SNP	A	G	A	A	A	A	A	G	A	A	A	G	A	G	G	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss48221979	NES11798672	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr7:48492828 () rs orientation: forward

Symbol	Name	Function Class
Csrp3	cysteine and glycine-rich protein 3	within coordinates
Rr646924	regulatory region 646924	343 bp distal
Rr646925	regulatory region 646925	1888 bp proximal
Tssr72622	transcription start site region 72622	561 bp downstream
Tssr72623	transcription start site region 72623	583 bp downstream