rs32859420 SNP Detail

Summary

• ID
  rs32859420
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr7:48493446 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              AACAAAGATA GATAGATAGA
  TAGATAGATA GATAGATAGA TAGATAGATA GATAGATAGA TAGATAGATA GATAAATGGA
  TCTGGGAGTG ATGCTTACGC CAAGAGTTGG AGCAGAGACC TCCAGCCGCT CAGTAACTTG
  TTCAGCTCAC TGCTGGCTCG CTGGCCAAGT CTAACAGAAG CTTCCACATG GTGAGTTGAA
  Y
  GTCAACATGG GCTGAGACAA AGTTCTCATA GGAACCCTGC CTGGACTTTG TGATAGAGTT
  AGTACTATCT CAGAAATTGC CACTGATGTG AAAGGTTCTA GAGCACTGGC CTTGGAGCAG
  ACACTGCAGT AACACCTGAC CAGTAACCCT TCCAGGCAGG TGCTGTTGAA ACCAACTGTT
  CAGGTAGGGA AATGTGCGCT                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss48221982	NES11798614	PERLEGEN	MM_PANEL2	f	SNP	C	C	C	C	C	C	C	C	C	C	C	C	C	T	C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs32859420					SNP	C	C	C	C	C	C	C	C	C	C	C	C	C	T	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss48221982	NES11798614	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr7:48493446 () rs orientation: forward

Symbol	Name	Function Class
Csrp3	cysteine and glycine-rich protein 3	Intron
Rr646924	regulatory region 646924	961 bp distal
Rr646925	regulatory region 646925	1270 bp proximal
Tssr72622	transcription start site region 72622	36 bp upstream
Tssr72623	transcription start site region 72623	24 bp upstream
Tssr72624	transcription start site region 72624	1513 bp downstream
Tssr72625	transcription start site region 72625	1540 bp downstream