rs32860644 SNP Detail

Summary

• ID
  rs32860644
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr7:48494300 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GGAATAAGTG GTGTTCAAAC
  ACGGAAGGAC TCCTCTAAAG CTGGAAGTCT CTTTTCATTG TTGATTCTCA TCTCCTTTGG
  GAATGGACAT CTATGTAACT AAAATACAGC AAAGCATCCT TCAAGCCCTG AGACCAATTT
  TAAGGACCTG AACTGTGAAT GATAGAAGCC TCTCTTTGCA GAAACGCTGC TCAGCAGAGT
  Y
  CCCTCTTAAG TGCCATCTCT TCTCTTAATT CAGCAAGGCA GACAATGAAG TGTGAGAAGG
  CGCAGGCTTT TAAAAGAACT AAAGCTCCAT TCAGGACATT AGCAGTCTGA TCTGGGGCAC
  ACGGCTCTGA CTCCTGAGCA CAGCCCCCAT GGATGTCAAA ATGAGCAGGT TTGTCCCAGG
  ATGCTGAAGG CAATAACAGT                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	PWD/PhJ	WSB/EiJ
ss48221990	NES11798569	PERLEGEN	MM_PANEL2	f	SNP	T		T	T	T	T	T	C	T	T	T	C	T	C	C
ss149207730	ENSMUSSNP2448659	ENSEMBL	ENSEMBL_Sanger	f	SNP		C							T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	PWD/PhJ	WSB/EiJ
rs32860644					SNP	T	C	T	T	T	T	T	C	T	T	T	C	T	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss48221990	NES11798569	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr7:48494300 () rs orientation: forward

Symbol	Name	Function Class
Csrp3	cysteine and glycine-rich protein 3	within coordinates
Rr646924	regulatory region 646924	1815 bp distal
Rr646925	regulatory region 646925	416 bp proximal
Tssr72622	transcription start site region 72622	890 bp upstream
Tssr72623	transcription start site region 72623	878 bp upstream
Tssr72624	transcription start site region 72624	659 bp downstream
Tssr72625	transcription start site region 72625	686 bp downstream