rs32860647 SNP Detail

Summary

• ID
  rs32860647
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr7:48494585 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CTCCATTCAG GACATTAGCA
  GTCTGATCTG GGGCACACGG CTCTGACTCC TGAGCACAGC CCCCATGGAT GTCAAAATGA
  GCAGGTTTGT CCCAGGATGC TGAAGGCAAT AACAGTGACT ACATATACAC TCTTAGTGCA
  CACAAGGATC CAATGATTGT TGCTGCCTTT AGATTACCAC GATAGTTGAT TGATGTGATT
  Y
  GCTGTGCAGT GTTTGAATCT CTTTTTGTAA AACAAGCAAA CCTCTCTCTT TTTTTCCCTT
  CTTTGTGAGT ATTCATTTCA GACCACAAAT CAACTGTTTC TCCAGTTTTT AGAATCTCAG
  CCACCCATGT GTGGGTGTCA GCCCAGGGGA GTGTCTGCTC GCATCTCAGG CTGCCTGTAT
  CACTGACTGA GTTGGCCTCC                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	PWD/PhJ	WSB/EiJ
ss48221993	NES11798574	PERLEGEN	MM_PANEL2	f	SNP	T		T	T	T	T	T	C	T	T	T	C	T	C	T
ss149207742	ENSMUSSNP2071700	ENSEMBL	ENSEMBL_Sanger	f	SNP		C	T						T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	PWD/PhJ	WSB/EiJ
rs32860647					SNP	T	C	T	T	T	T	T	C	T	T	T	C	T	C	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss48221993	NES11798574	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr7:48494585 () rs orientation: forward

Symbol	Name	Function Class
Csrp3	cysteine and glycine-rich protein 3	within coordinates
Rr646925	regulatory region 646925	131 bp proximal
Rr646926	regulatory region 646926	1943 bp proximal
Tssr72622	transcription start site region 72622	1175 bp upstream
Tssr72623	transcription start site region 72623	1163 bp upstream
Tssr72624	transcription start site region 72624	374 bp downstream
Tssr72625	transcription start site region 72625	401 bp downstream